Helium (He) with its isotopes (3He, 4He) is a key tracer enabling the Earth’s mantle and dynamics to be characterized. Enrichment in primordial helium (3He) has been detected in volcanic gases of numerous magmatic systems in different geodynamic settings. Despite past use to monitor volcanotectonic unrest, temporal 3He/4He variability in volcanic emissions is still poorly constrained. Here, we investigate noble gas chemistry of Piton de la Fournaise hotspot volcano, where temporal fluctuations of 3He/4He in response to the eruptive activity have never been studied. We compare the 3He/4He signature of volcanic gases and fluid inclusions and we highlight analogous evolution of the 3He/4He signature in both during the last decades of eruptive activity (1990–2017), even during the same eruption. We show that the maximum enrichment in 3He is found in magmatic fluids that fed the most voluminous eruptions which culminated in caldera collapse events. We argue that this enrichment in 3He mostly reflects a greater contribution of magmatic fluids from a primitive component of the mantle plume. These results emphasize that He isotopes may provide warnings of increases in deep magmatic contributions that potentially herald paroxysmal eruptions, as documented here at Piton de la Fournaise (2007) and also at Kilauea (2018).