Y. Abu-kwaik, B. I. Eisenstein, and N. C. Engleberg, Phenotypic modulation by Legionella pneumophila upon infection of macrophages, Infect. Immun, vol.61, pp.1320-1329, 1993.

A. J. Baumler, J. G. Kusters, I. Stojiljkovic, and F. Heffron, Salmonella typhimurium loci involved in survival within macrophages, Infect. Immun, vol.62, pp.1623-1630, 1994.

J. Boudeau, N. Barnich, and A. Darfeuille-michaud, Type 1 pilimediated adherence of Escherichia coli strain LF82 isolated from Crohn's disease is involved in bacterial invasion of intestinal epithelial cells, Mol. Microbiol, vol.39, pp.1272-1284, 2001.

J. Boudeau, A. L. Glasser, E. Masseret, B. Joly, and A. Darfeuille-michaud, Invasive ability of an Escherichia coli strain isolated from the ileal mucosa of a patient with Crohn's disease, Infect. Immun, vol.67, pp.4499-4509, 1999.

N. A. Buchmeier and F. Heffron, Induction of Salmonella stress proteins upon infection of macrophages, Science, vol.248, pp.730-732, 1990.

D. A. Burke and A. T. Axon, Adhesive Escherichia coli in inflammatory bowel disease and infective diarrhoea, BMJ, vol.297, pp.102-104, 1988.

B. Et and A. I. Immun,

J. A. Chabalgoity, C. M. Khan, A. A. Nash, and C. E. Hormaeche, A Salmonella typhimurium htrA live vaccine expressing multiple copies of a peptide comprising amino acids 8-23 of herpes simplex virus glycoprotein D as a genetic fusion to tetanus toxin fragment C protects mice from herpes simplex virus infection, Mol. Microbiol, vol.19, pp.791-801, 1996.

M. K. Chaveroche, J. M. Ghigo, and C. , A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans, Nucleic Acids Res, vol.28, p.97, 2000.

G. Cortes, B. De-astorza, V. J. Benedi, and S. Alberti, Role of the htrA gene in Klebsiella pneumoniae virulence, Infect. Immun, vol.70, pp.4772-4776, 2002.

A. Darfeuille-michaud, Adherent-invasive Escherichia coli: a putative new E. coli pathotype associated with Crohn's disease, Int. J. Med. Microbiol, vol.292, pp.185-193, 2002.

A. Darfeuille-michaud, J. Boudeau, P. Bulois, C. Neut, A. L. Glasser et al., High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease, Gastroenterology, vol.127, pp.412-421, 2004.

A. Darfeuille-michaud, C. Neut, N. Barnich, E. Lederman, P. D. Martino et al., Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease, Gastroenterology, vol.115, pp.1405-1413, 1998.

K. A. Datsenko and B. L. Wanner, One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products, Proc. Natl. Acad. Sci. USA, vol.97, pp.6640-6645, 2000.

C. De-chastellier and P. Berche, Fate of Listeria monocytogenes in murine macrophages: evidence for simultaneous killing and survival of intracellular bacteria, Infect. Immun, vol.62, pp.543-553, 1994.

U. S. Eggert, N. Ruiz, B. V. Falcone, A. A. Branstrom, R. C. Goldman et al., Genetic basis for activity differences between vancomycin and glycolipid derivatives of vancomycin, Science, vol.294, pp.361-364, 2001.

S. Eriksson, S. Lucchini, A. Thompson, M. Rhen, and J. C. Hinton, Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica, Mol. Microbiol, vol.47, pp.103-118, 2003.

P. Everest, G. Frankel, J. Li, P. Lund, S. Chatfield et al., Expression of LacZ from the htrA, nirB and groE promoters in a Salmonella vaccine strain: influence of growth in mammalian cells, FEMS Microbiol. Lett, vol.126, pp.97-101, 1995.

O. Gal-mor and G. Segal, Identification of CpxR as a positive regulator of icm and dot virulence genes of Legionella pneumophila, J. Bacteriol, vol.185, pp.4908-4919, 2003.

A. L. Glasser, J. Boudeau, N. Barnich, M. H. Perruchot, J. F. Colombel et al., Adherent invasive Escherichia coli strains from patients with Crohn's disease survive and replicate within macrophages without inducing host cell death, Infect. Immun, vol.69, pp.5529-5537, 2001.

G. Heusipp, K. M. Nelson, M. A. Schmidt, and V. L. Miller, Regulation of htrA expression in Yersinia enterocolitica, FEMS Microbiol. Lett, vol.231, pp.227-235, 2004.

G. Heusipp, M. A. Schmidt, and V. L. Miller, Identification of rpoE and nadB as host responsive elements of Yersinia enterocolitica, FEMS Microbiol. Lett, vol.226, pp.291-298, 2003.

K. Hiratsu, M. Amemura, H. Nashimoto, H. Shinagawa, and K. Makino, The rpoE gene of Escherichia coli, which encodes sigma E, is essential for bacterial growth at high temperature, J. Bacteriol, vol.177, pp.2918-2922, 1995.

K. Johnson, G. Charles, D. Dougan, P. Pickard, G. O'gaora et al., The role of a stress-response protein in Salmonella typhimurium virulence, Mol. Microbiol, vol.5, pp.401-407, 1991.

L. W. Lamps, K. T. Madhusudhan, J. M. Havens, J. K. Greenson, M. P. Bronner et al., Pathogenic yersinia DNA is detected in bowel and mesenteric lymph nodes from patients with Crohn's disease, Am. J. Surg. Pathol, vol.27, pp.220-227, 2003.
DOI : 10.1097/00000478-200302000-00011

M. A. Lety, C. Frehel, I. Dubail, J. L. Beretti, S. Kayal et al., Identification of a PEST-like motif in listeriolysin O required for phagosomal escape and for virulence in Listeria monocytogenes, Mol. Microbiol, vol.39, pp.1124-1139, 2001.

S. R. Li, N. Dorrell, P. H. Everest, G. Dougan, and B. W. Wren, Construction and characterization of a Yersinia enterocolitica O:8 high-temperature requirement (htrA) isogenic mutant, Infect. Immun, vol.64, pp.2088-2094, 1996.

J. Lin and T. A. Ficht, Protein synthesis in Brucella abortus induced during macrophage infection, Infect. Immun, vol.63, pp.1409-1414, 1995.

B. Lipinska, O. Fayet, L. Baird, and C. Georgopoulos, Identification, characterization, and mapping of the Escherichia coli htrA gene, whose product is essential for bacterial growth only at elevated temperatures, J. Bacteriol, vol.171, pp.1574-1584, 1989.

Y. Liu, H. J. Van-kruiningen, A. B. West, R. W. Cartun, A. Cortot et al., Immunocytochemical evidence of Listeria, Escherichia coli, and Streptococcus antigens in Crohn's disease, Gastroenterology, vol.108, pp.1396-1404, 1995.
DOI : 10.1016/0016-5085(95)90687-8

W. R. Lyon and M. G. Caparon, Role for serine protease HtrA (DegP) of Streptococcus pyogenes in the biogenesis of virulence factors SpeB and the hemolysin streptolysin S, Infect. Immun, vol.72, pp.1618-1625, 2004.

S. Minagawa, H. Ogasawara, A. Kato, K. Yamamoto, Y. Eguchi et al., Identification and molecular characterization of the Mg 2 stimulon of Escherichia coli, J. Bacteriol, vol.185, pp.3696-3702, 2003.

K. Mukherjee, S. Parashuraman, G. Krishnamurthy, J. Majumdar, A. Yadav et al., Diverting intracellular trafficking of Salmonella to the lysosome through activation of the late endocytic Rab7 by intracellular delivery of muramyl dipeptide, J. Cell Sci, vol.115, pp.3693-3701, 2002.

L. L. Pedersen, M. Radulic, M. Doric, and Y. Abu-kwaik, HtrA homologue of Legionella pneumophila: an indispensable element for intracellular infection of mammalian but not protozoan cells, Infect. Immun, vol.69, pp.2569-2579, 2001.

D. K. Podolsky, Inflammatory bowel disease, N. Engl. J. Med, vol.347, pp.417-429, 2002.

G. E. Purdy, M. Hong, and S. M. Payne, Shigella flexneri DegP facilitates IcsA surface expression and is required for efficient intercellular spread, Infect. Immun, vol.70, pp.6355-6364, 2002.
DOI : 10.1128/iai.70.11.6355-6364.2002

URL : https://iai.asm.org/content/70/11/6355.full.pdf

T. L. Raivio and T. J. Silhavy, The E and Cpx regulatory pathways: overlapping but distinct envelope stress responses, Curr. Opin. Microbiol, vol.2, pp.159-165, 1999.
DOI : 10.1016/s1369-5274(99)80028-9

R. B. Sartor, H. C. Rath, S. N. Lichtman, and E. A. Van-tol, Animal models of intestinal and joint inflammation, Baillieres Clin. Rheumatol, vol.10, pp.55-76, 1996.
DOI : 10.1016/s0950-3579(96)80006-9

C. Schultsz, M. Moussa, R. Van-ketel, G. N. Tytgat, and J. Dankert, Frequency of pathogenic and enteroadherent Escherichia coli in patients with inflammatory bowel disease and controls, J. Clin. Pathol, vol.50, pp.573-579, 1997.
DOI : 10.1136/jcp.50.7.573

URL : https://jcp.bmj.com/content/50/7/573.full.pdf

R. W. Simons, F. Houman, and N. Kleckner, Improved single and multicopy lac-based cloning vectors for protein and operon fusions, Gene, vol.53, pp.85-96, 1987.
DOI : 10.1016/0378-1119(87)90095-3

J. Skorko-glonek, D. Zurawa, E. Kuczwara, M. Wozniak, Z. Wypych et al., The Escherichia coli heat shock protease HtrA participates in defense against oxidative stress, Mol. Gen. Genet, vol.262, pp.342-350, 1999.

S. N. Tabrizi and R. M. Robins-browne, Influence of a 70 kilobase virulence plasmid on the ability of Yersinia enterocolitica to survive phagocytosis in vitro, Microb. Pathog, vol.13, pp.171-179, 1992.

T. L. Testerman, A. Vazquez-torres, Y. Xu, J. Jones-carson, S. J. Libby et al., The alternative sigma factor E controls antioxidant defences required for Salmonella virulence and stationary-phase survival, Mol. Microbiol, vol.43, pp.771-782, 2002.
DOI : 10.1046/j.1365-2958.2002.02787.x

URL : http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2958.2002.02787.x/pdf

L. G. Tilney, O. S. Harb, P. S. Connelly, C. G. Robinson, and C. R. Roy, How the parasitic bacterium Legionella pneumophila modifies its phagosome and transforms it into rough ER: implications for conversion of plasma membrane to the ER membrane, J. Cell Sci, vol.114, pp.4637-4650, 2001.

R. H. Valdivia and S. Falkow, Fluorescence-based isolation of bacterial genes expressed within host cells, Science, vol.277, pp.2007-2011, 1997.
DOI : 10.1126/science.277.5334.2007

T. Yamamoto, T. Hanawa, and S. Ogata, Induction of Yersinia enterocolitica stress proteins by phagocytosis with macrophage, vol.38, pp.295-300, 1994.

T. Yamamoto, T. Hanawa, S. Ogata, and S. Kamiya, Identification and characterization of the Yersinia enterocolitica gsrA gene, which protectively responds to intracellular stress induced by macrophage phagocytosis and to extracellular environmental stress, Infect. Immun, vol.64, pp.2980-2987, 1996.

T. Yamamoto, T. Hanawa, S. Ogata, and S. Kamiya, The Yersinia enterocolitica GsrA stress protein, involved in intracellular survival, is induced by macrophage phagocytosis, Infect. Immun, vol.65, pp.2190-2196, 1997.

J. Yu and J. S. Kroll, DsbA: a protein-folding catalyst contributing to bacterial virulence, Microbes Infect, vol.1, pp.1221-1228, 1999.
DOI : 10.1016/s1286-4579(99)00239-7

A. Zumla and D. G. James, Granulomatous infections: etiology and classification, Clin. Infect. Dis, vol.23, pp.146-158, 1996.
DOI : 10.1093/clinids/23.1.146

URL : https://academic.oup.com/cid/article-pdf/23/1/146/1597120/23-1-146.pdf

A. Zychlinsky, M. C. Prevost, and P. J. Sansonetti, Shigella flexneri induces apoptosis in infected macrophages, Nature, vol.358, pp.167-169, 1992.
DOI : 10.1038/358167a0