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hal-01605696v1  Journal articles
P. SchlapferP. F. ZhangC. A. WangT. KimM. Banf et al.  Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants
Plant Physiology, American Society of Plant Biologists, 2017, 173 (4), pp.2041-2059. ⟨10.1104/pp.16.01942⟩
hal-00428159v2  Journal articles
Thomas HandorfNils ChristianOliver EbenhöhDaniel Kahn. An environmental perspective on metabolism
Journal of Theoretical Biology, Elsevier, 2008, 252 (3), pp.530-537. ⟨10.1016/j.jtbi.2007.10.036⟩
hal-00428358v2  Journal articles
Jean-François GoutLaurent DuretDaniel Kahn. Differential retention of metabolic genes following whole-genome duplication
Molecular Biology and Evolution, Oxford University Press (OUP), 2009, 26 (5), pp.1067-1072. ⟨10.1093/molbev/msp026⟩
hal-01213733v1  Journal articles
O EbenhöhT HandorfDaniel Kahn. Evolutionary changes of metabolic networks and their biosynthetic capacities
Systems Biology, Institution of Engineering and Technology, 2006, 153 (5), pp.354-358. ⟨10.1049/ip-syb:20060014⟩
hal-01213737v1  Journal articles
T HandorfO EbenhöhDaniel KahnR Heinrich. Hierarchy of metabolic compounds based on their synthesising capacity
Systems Biology, Institution of Engineering and Technology, 2006, 153 (5), pp.359-363. ⟨10.1049/ip-syb:20060021⟩
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hal-01214141v1  Journal articles
Sarah HunterRolf ApweilerTeresa K AttwoodAmos BairochAlex Bateman et al.  InterPro: the integrative protein signature database
Nucleic Acids Research, Oxford University Press, 2009, 37 (Database issue), pp.D211-D215. ⟨10.1093/nar/gkn785⟩
hal-00793021v1  Conference papers
Valentina BaldazziDelphine RopersYves MarkowiczDaniel KahnHans Geiselmann et al.  The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes
Actes des Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2010), 2010, Montpellier, France. pp.11-12
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hal-00434830v2  Journal articles
Nicola J MulderRolf ApweilerTeresa K AttwoodAmos BairochAlex Bateman et al.  New developments in the InterPro database
Nucleic Acids Research, Oxford University Press, 2007, 35 (Database issue), pp.D224-D228. ⟨10.1093/nar/gkl841⟩
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hal-00762620v1  Journal articles
Sara BerthoumieuxMatteo BrilliDaniel KahnHidde de JongEugenio Cinquemani. On the identifiability of metabolic network models.
Journal of Mathematical Biology, Springer Verlag (Germany), 2013, 67 (6-7), pp.1795-832. ⟨10.1007/s00285-012-0614-x⟩
hal-00803472v1  Conference papers
Daniel KahnClément RezvoyFrédéric Vivien. Parallel large scale inference of protein domain families
ICPADS'2008, the 14th IEEE International Conference on Parallel and Distributed Systems, 2008, Unknown, Australia. pp.72-79, ⟨10.1109/ICPADS.2008.115⟩